Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015810665.1_cds_XP_016496316.1_10550
CDS Infomation

[gene=LOC107815266] [db_xref=GeneID:107815266] [protein=autophagy-related protein 18h-like] [protein_id=XP_016496316.1] [location=join(9..56,162..605,1604..1849,1953..2747,2831..3009,5217..5302,5388..5945,6289..6293)] [gbkey=CDS]
Sequence

ATGGTTAGATGCAGTCCGAAGGTAGTGGCTGTTGGTCTTGCAGCACAGATATATTGTTTT
GATGCTCTTACCTTAGAGAACAAGTTTAGCGTGCTCACATATCCTGTGCCTCAGTTGGGT
GGCCAAGGTGTGACTGGGGTTAACATTGGCTACGGTCCCATGGCTGTAGGACCGAGATGG
TTAGCATATGCTTCAAATAATCCGCTGTTGTCAAACACAGGGCGCTTGAGTCCCCAAAGT
CTTAGTCCTTCTCCAGGTGTTAGCCCTTCTACTTCACCTGGTAACGGAAATCTGGTAGCT
AGGTATGCCATGGAATCAAGCAAACATCTAGCTGCTGGATTGATCAATCTTGGGGACATG
GGATACAAAACTTTGTCAAAATACTGTCATGAACTTCTTCCTGACGGGAGTAATTCACCA
GTGTCAACAAGTGCTAGCTGGAAAGTTGGGAGGGTTCCAGCACATTCACCTGAAACAGAT
GCCGCGGGCATGGTTGTTATTAAAGATTTTGTTTCTAGAGCAGTTATTTCACAATTCAGG
GCGCATTCCAGTCCTATATCTGCTCTGTGTTTTGACCCTAGTGGCACTCTTCTTGTAACT
GCCTCTACACGTGGGAATAATATAAACATATTTCGCATTGTACCTTCTTGCTCACCAAAT
GGAGCAGGCAGCCAAAGCAGCGATTGGAAAGCTTCACATGTCCACCTCTACAAGCTTCAT
CGGGGTGTGACTCCAGCTGTGATACAAGACATTTGTTTTAGTCACTACAGTCAGTGGGTA
GCTATTATTTCTTCCAGGGGAACTTGCCATCTTTTTGTCCTATCCCCTTTTGGTGGTGAG
ACTGGTCTTCAACTACAAAATTCTCATGTTGATGGACCCATACTTCTACCTATTCTTTCG
GGACCATGGTGGTCTACATCATCTTTCATGGTCAATCAGCAGTCTTTTGCGCCAGCGCCA
GCACCTATCACTCTCTCTGTGGTCAACAGGATAAAGAATGTGAATTCAGGTTGGCTAAAT
ACAGTGAGCAATGCCGCATCTTCTGCAGCCGGAAAGGTTTCTGTGCCTTCTGGTGTTCTT
GCTGCTGTTTTTCATAGTTCTGTACGCCGGGAACAACCTGCTCCGCAAAACTTCAATCCG
TTGGAGCATCTTTTGGCTTATACTCCATCTGGTCACTTAATTCAATATGAGTTGATGCCC
TCATTTGGTGGAGAACAGGGTGACGCGTATCTGAGAACCGGGACTGCATCAGTAGTTCAA
ATGCAAGAGGATGACGCTGGGGTGAAAGTTGACTCCATTCAGTGGTGGGATGTTTGTCGA
AGAGCTGATTGGCCTGAAAGAGAGGAATGTATTCATGGCATTACTATAGGTGGCCGTGAA
GTAACAGACATTGTCATGGGAGATTCTCTTTCTGAAGATGATGATACGGGTGAAAAGGAT
TCTGCTAAGCTATGTGACCGGTCCCATTGGTACCTTTCCAATGCTGAGGTGCAGTTGAAG
TCTGGGAGGATACCTGTTTGGCAAAAGTCCAAGATATACTTCTGTACCATGAGTCTTTCT
GGATACGAAGAGCAGGATCTCTCTAGAAGTTTTTCTGCTGGGGAGATTGAGATTGAGAAG
ATTCCTGTCAATGAGGTCGAAATAAGGCGTAAAGATCTACTGCCTGTGTTTGACCATTTC
CACAGAATTCCATCAAAATGGTCTGATGATAGCTCTGCCATGGGTAAAGAAAAGTCAGGA
GACACCACAACTGGTATTGCCAGGGCAGACTCGCTCTCTGAGAAAAGCTTTCCTTCTGGG
TCTTCACAAGTTCCTGGTTTACATGAAGTGGGCGTAGGTCCAATTTCTTATCCATGTATT
GAACTATCTATGGAAGAAAATGATGGGTTGAGAAGCTCTAGTTATACTGTAGCCCCACAA
GTGAGTAACAAAGTGCAGGCTGGTCTAGAATCATCCCCAAATATCTTGTGCTCCGTTGAG
GAAAGCTATGTTTTAAATAGTCAGTCTCCTCCCAAAATTGAATCCTTCTCCACCAGAGGA
ATAAGTGCAAGAGAGGTTCAGTCTTCAAACAGTGTTGTTACTAGTGAAGCTTCAAACTCA
AGTTCCAATCGTTCCGACATGAGTATGAACATTATTGACGAACAAACTGTTCATGAAGAT
ATATGTGACCCTGTAGATTTTGGGCAATTTTTTCAAGAAGGCTACTGTAAGGCTTCAACT
AACAATAAATTAAATGAGGTAAATGAACTGGTTGCTGATATGGATAGCAGTAGTAGTCCT
TGCGACAAAGAGAAACCTGATGATGATGGGGAAAGCGATGATATGCTGGGAGGTGTGTTT
GACTTCTCCGAAGAAGGTTGA

Peptide Sequence

PEP ID

XP_016496316.1
PEP Infomation

PREDICTED: autophagy-related protein 18h-like [Nicotiana tabacum]
Sequence

MVRCSPKVVAVGLAAQIYCFDALTLENKFSVLTYPVPQLGGQGVTGVNIGYGPMAVGPRW
LAYASNNPLLSNTGRLSPQSLSPSPGVSPSTSPGNGNLVARYAMESSKHLAAGLINLGDM
GYKTLSKYCHELLPDGSNSPVSTSASWKVGRVPAHSPETDAAGMVVIKDFVSRAVISQFR
AHSSPISALCFDPSGTLLVTASTRGNNINIFRIVPSCSPNGAGSQSSDWKASHVHLYKLH
RGVTPAVIQDICFSHYSQWVAIISSRGTCHLFVLSPFGGETGLQLQNSHVDGPILLPILS
GPWWSTSSFMVNQQSFAPAPAPITLSVVNRIKNVNSGWLNTVSNAASSAAGKVSVPSGVL
AAVFHSSVRREQPAPQNFNPLEHLLAYTPSGHLIQYELMPSFGGEQGDAYLRTGTASVVQ
MQEDDAGVKVDSIQWWDVCRRADWPEREECIHGITIGGREVTDIVMGDSLSEDDDTGEKD
SAKLCDRSHWYLSNAEVQLKSGRIPVWQKSKIYFCTMSLSGYEEQDLSRSFSAGEIEIEK
IPVNEVEIRRKDLLPVFDHFHRIPSKWSDDSSAMGKEKSGDTTTGIARADSLSEKSFPSG
SSQVPGLHEVGVGPISYPCIELSMEENDGLRSSSYTVAPQVSNKVQAGLESSPNILCSVE
ESYVLNSQSPPKIESFSTRGISAREVQSSNSVVTSEASNSSSNRSDMSMNIIDEQTVHED
ICDPVDFGQFFQEGYCKASTNNKLNEVNELVADMDSSSSPCDKEKPDDDGESDDMLGGVF
DFSEEG

Transcript Sequence

Gene sequence data has not been registered.